Hotels with Pool & Resorts in Ayios Thomas

  • Plan, book, stay with confidence
  • bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    payments icon
    Treat yourself
    Sign in to save 10% or more on thousands of hotels
    today icon
    Change your mind
    Book hotels with free cancellation

Best Ayios Thomas Hotels with Pool

Beautiful view of the beach with palm trees

Black Friday: Members save 30%+

Members save 30%+ on selected hotels until 4 Dec (property time) with our Black Friday deals. Stay by 15 Dec 2025.

Frequently asked questions

What are some accommodation options with pools in Ayios Thomas?
Aquila Atlantis Hotel: Hotel, 12-minute walk from Heraklion Port. Features a full-service spa, a seasonal outdoor pool and a snack bar/deli. Sofia Hotel: Hotel located near Heraklion Port. Offers a snack bar/deli, an outdoor pool and free self parking. Agapi Beach Resort - Premium All Inclusive: Provides 3 outdoor swimming pools, a children’s pool and a private beach. Mitsis Rinela: Features 2 outdoor swimming pools, a children’s pool and a private beach. Atrion Hotel: Hotel, 10-minute walk from Heraklion Port. Features a health club, a seasonal outdoor pool and a sauna.
What is there to see and do in Ayios Thomas?
Explore places such as Heraklion Port while you’re in the area. Make a point to visit attractions such as Ammoudara Beach and Natural History Museum of Crete.
When is the best time to book a hotel with a pool in Ayios Thomas?
You may want to consider a place to stay with an outdoor swimming pool if you’ll be visiting Ayios Thomas in the warmest months of July, August or June, when the average temp is 25°C. Accommodation with an indoor pool may be the way to go if you are visiting during the coldest months of January, February or March, when the average temperature is 13°C.