Boutique Hotels & Resorts in Kota Kinabalu from AU$86

  • Plan, book, stay with confidence
    • bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    payments icon
    Treat yourself
    Sign in to save 10% or more on thousands of hotels
    Sign in
    today icon
    Change your mind
    Book hotels with free cancellation

Best Kota Kinabalu Boutique Hotels

Bunga Raya Island Resort & Spa
Aerial view

Bunga Raya Island Resort & Spa

5.0 star property
8.6 out of 10, Excellent, (169)
"BEAUTIFUL ESCAPE. "
The price is AU$412
includes taxes & fees
1 Dec - 2 Dec
Bunga Raya Island Resort & Spa
Gaya Island Resort
Outdoor pool, pool umbrellas, pool loungers

Gaya Island Resort

5.0 star property
8.8 out of 10, Excellent, (441)
"Wonderful location and views. Staff were always friendly, helpful and polite. Fantastic range of activities. "
Gaya Island Resort
Gayana Marine Resort
Poolside bar

Gayana Marine Resort

5.0 star property
8.4 out of 10, Very good, (470)
"Great getaway resort away from the hustle and bustle. Perfect for a couple nights stay as may run out of activities within the vicinity if staying longer. Staff were amazing and kind! Thank you to all!! Property condition is a bit outdated with expected wear and tear but kept clean enough for an enjoyable stay."
The price is AU$397
includes taxes & fees
1 Dec - 2 Dec
Gayana Marine Resort
The Jesselton Hotel
Jesselton Suite | Terrace/patio

The Jesselton Hotel

3.5 star property
8.4 out of 10, Very good, (452)
"Place is very convenient, recommended 👍👍👍"
The price is AU$86
includes taxes & fees
25 Nov - 26 Nov
The Jesselton Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Don't see what you're looking for?
See all available properties in Kota Kinabalu
Beautiful view of the beach with palm trees

Black Friday: Members save 30%+

Members save 30%+ on selected hotels until 4 Dec (property time) with our Black Friday deals. Stay by 15 Dec 2025.
Unlock Black Friday deals

Frequently asked questions

What's the best boutique hotel in Kota Kinabalu?
Gaya Island Resort is a favourite 5-star resort with Expedia travellers looking for stylish accommodation, and features a restaurant and a beach bar. Bunga Raya Island Resort & Spa and Gayana Marine Resort are a couple of other boutique hotels.
What's there to see and do in Kota Kinabalu?
The shopping, island views and snorkelling are just some of the things to enjoy while you’re in the area. Activities and attractions to experience around Kota Kinabalu include Centre Point, Anjung Samudera and Sabah State Museum. For even more to see and do, make a stop at Kompleks Asia City, Oceanus Waterfront Mall and Kota Kinabalu Central Market.
What kind of weather should I plan for when I travel to Kota Kinabalu?
Having a good idea of the weather in Kota Kinabalu will help you enjoy your stay to the fullest. The hottest months are usually May and June, with an average temperature of 28°C, while the coldest months are February and January, with an average of 27°C. The rainiest months in Kota Kinabalu are January, November, December and October, with each month seeing an average of 251 mm of rainfall.
What's the best way to get to my boutique hotel in Kota Kinabalu?
You have a few options for travelling to and around Kota Kinabalu. The nearest major airport is Kota Kinabalu (BKI-Kota Kinabalu Intl.), which is located 4 mi (6.5 km) from the heart of the city. To explore the surrounding area, ride one of the trains from Tanjung Aru Station or Putatan Station.